My charge port door is exactly like yours, rear right trunk/side panel gap is like yours, the roof/cantrail gap I cannot tell. For roof/cantrail their allowances are up to 1/2”, I had mine checked because the rear window right side is perfectly flush but the left side has a 1/2” gap which raises the cantrail bow tie on the back just a little. They leak tested the car VERY thoroughly, and it will not leak. I left the charge port door alone and didn’t ask service to examine it assuming it stuck out just a little because one way to open it is to push inwards in that bottom corner area (and also some GTs the charge port door actually can be too close to the body when it opens and slightly rub it like on the car Kyle with Out of Spec tested).